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The registry drives the menu. Toggle an experiment off to hide it, edit its metadata, or register a brand-new self-contained page by pointing at its URL. Changes are stored in this browser.

• Start Here — Interactive Pipeline Walkthrough

  Pipeline · confusion-matrix-by-family · scripts/build_experiment_confusion_matrix.py

  Open this one first. An interactive, click-through (or auto-play) flowchart of the entire ConnectionMiner pipeline — every input, every matrix it builds, what the solver does, every output. C, Ĉ, and β are live Plotly charts (hover any cell/dot for real type or gene names); every node explains what's on the x-axis, the y-axis, and what the pattern is actually telling you.

  OpenEdit

• UMAP + Confusion Matrix — per Family

  Recovery Battery · umap-vs-confusion · scripts/build_umap_confusion_dashboard.py

  Same 4 recovery-battery conditions as the confusion-matrix experiment, but each confusion matrix is paired with a t-SNE/UMAP scatter of the underlying cells (green = predicted matches true type, red = mismatch). Hover any point for its predicted vs. true type.

  OpenEdit

• Recovery Battery — How It Works

  Recovery Battery · recovery-battery-explainer · scripts/build_experiment_recovery_battery_explainer.py

  The flowchart for the *other* experiment in this hub — not the regular solver run, but the hide-30%-and-recover stress test. Walks through the 70/30 split, the two solver passes (connectivity-only vs. NC-gated expression), the shuffle-null scoring, and the YES/no/ANTI verdict — with real numbers (e.g. TmY: 10.7% → 94.6% recovery) at every step.

  OpenEdit

• UMAP + Matrix Heatmaps — Full Solver Run

  Full Solver Run · solver-overview · scripts/build_experiment_solver_overview.py

  The regular (non-recovery-battery) end-to-end solver run: a UMAP/t-SNE of all 109,743 cells colored by inferred functional subsystem, paired with a tab-switcher for every matrix the solver produces or consumes — C, Ĉ, P (solved), P Constraints, β, G, Gene Correlation (ref), and the loss trajectory — all live, hoverable Plotly charts, each with an axis + interpretation readout. Hovering a UMAP point cross-highlights its type's row/column live on the C and Ĉ tabs.

  OpenEdit

• Family Battery — All Complete-Picture Views

  Recovery Battery · family-battery-all-in-one

  Every family's full 5-condition recovery battery in one self-contained document: Lamina, Lawf, Lamina+Lawf, Dm, Mi, Tm, TmY, T4, T5, C, LC and LPLC. Each view carries its own condition switcher, so the page runs standalone with no dependency on the hub.

  OpenEdit

• Motor ↔ Visual — Linked Dashboard

  Full Solver Run · motor-visual-linked

  Cross-subsystem linked view tying motor-side types to visual-system types: selecting on one panel highlights the corresponding rows/columns on the other, so shared connectivity motifs between the two subsystems are directly comparable.

  OpenEdit

• C Matrix — Full vs. Visual Split Heatmap

  Matrices · c-full-visual-split-heatmap

  The complete connectivity matrix C rendered as a split heatmap: full network on one side, visual-system-only submatrix on the other, at matched color scaling so density differences between the whole brain and the visual subsystem are readable at a glance.

  OpenEdit