ConnectionMiner · Drosophila connectomics
Click the brain. Open the experiment.
139,255 neurons, 50M+ synapses, and a solver that infers cell type from wiring alone. Every glowing probe on the map below is an independent, self-contained dashboard — UMAP embeddings, confusion matrices, recovery batteries and full solver runs.
Drosophila connectome · hover to excite the network · click a probe to open its experiment
Jump straight in
Start Here — Interactive Pipeline Walkthrough
Open this one first. An interactive, click-through (or auto-play) flowchart of the entire ConnectionMiner pipeline — every input, every matrix it builds, what the solver does, every output. C, Ĉ, and β are live Plotly charts (hover any cell/dot for real type or gene names); every node explains what's on the x-axis, the y-axis, and what the pattern is actually telling you.
Recovery BatteryUMAP + Confusion Matrix — per Family
Same 4 recovery-battery conditions as the confusion-matrix experiment, but each confusion matrix is paired with a t-SNE/UMAP scatter of the underlying cells (green = predicted matches true type, red = mismatch). Hover any point for its predicted vs. true type.
Recovery BatteryRecovery Battery — How It Works
The flowchart for the *other* experiment in this hub — not the regular solver run, but the hide-30%-and-recover stress test. Walks through the 70/30 split, the two solver passes (connectivity-only vs. NC-gated expression), the shuffle-null scoring, and the YES/no/ANTI verdict — with real numbers (e.g. TmY: 10.7% → 94.6% recovery) at every step.