ConnectionMiner

Experiment Hub

Start — Connectome map All experiments

Pipeline

Start Here — Interactive Pipeline Walkthrough

Morphology

Morphology — Motornew

Morphology — Visualnew

Full Solver Run

Replication — Visual disp h2000 seed 0

Replication — Visual disp h2000 seed 1

Replication — Motor seurat h2000 seed 0

Replication — Motor seurat h2000 seed 1

Connectome Atlas — Type Split (seurat_vst)

UMAP Views

Raw MultiomeNN Clusters on UMAP

Cell Type Constraints (P support) on UMAP

Metacell → Cluster Map

Matrices

Cluster → Metacell Count Matrix

Wiring vs. Distance — C, Soma & Neurite Matrices

Metacell Size Distributions — All 25 Combos

Physical Terms vs. Gene Model

Manage experiments

Experiment Hub Manage

Matrices

P × G — Type-Level Gene Expression (Post-Solve)

Open standalone ↗All experiments